Publications

Publications employing our PreOmics technologies

Here is a sampling of recent publications from scientists who use PreOmics technologies for their research
148
Rueda-Meija, Nageli et al. (2021)
Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes.
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147
Schieweck, Riedmann et al. (2021)
Pumilio2 and Staufen2 selectively balance the synaptic proteome.
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146
Ni Dhufaigh, Botwright et al. (2021)
Differential Exoproteome and Biochemical Characterisation of Neoparamoeba perurans.
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145
Correia, Guimaraes, Auf der Maur et al. (2021)
Hepatic stellate cells suppress NK cell-sustained breast cancer dormancy.
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144
Patalas-Krawczyk, Malinkska et al. (2021)
Effects of plant alkaloids on mitochondrial bioenergetic parameters.
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143
Sahadevan, Hembach, Tantardini et al. (2021)
Synaptic FUS accumulation triggers early misregulation of synaptic RNAs in a mouse model of ALS.
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142
Hayn, Hirschenberger et al. (2021)
Systematic Functional Analysis of SARS-CoV-2 Proteins Uncovers Viral Innate Immune Antagonists and Remaining Vulnerabilities.
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141
Bleu, Mermet-Meillon et al. (2021)
PAX8 and MECOM are interaction partners driving ovarian cancer.
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140
Van Bergen, Massey et al. (2021)
Abnormalities of mitochondrial dynamics and bioenergetics in neuronal cells from CDKL5 deficiency disorder.
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139
Donato, Buczak et al. (2021)
Mass spectrometry analysis of circulatingbreast cancer cells from a Xenograft mousemodel.
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138
Peruzzotti-Jametti, Bernstock et al. (2021)
Neural stem cells traffic functional mitochondria via extracellular vesicles.
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137
Lee, Kerouanton et al. (2021)
Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity.
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136
Poschel, Beebe et al. (2021)
Identification of disease-promoting stromal components by comparative proteomic and transcriptomic profiling of canine mammary tumors using laser-capture microdissected FFPE tissue.
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135
Jassinskaja, Pimkova et al. (2021)
Ontogenic shifts in cellular fate are linked toproteotype changes in lineage-biased hematopoieticprogenitor cells.
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134
Murenu, Kostidis et al. (2021)
Metabolic Analysis of Vitreous/Lens and Retina in Wild Type and Retinal Degeneration Mice.
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133
Mayr, Simon et al. (2021)
Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers.
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132
Pipitone, Eicke et al. (2021)
A multifaceted analysis reveals two distinct phases of chloroplast biogenesis during de-etiolation in Arabidopsis.
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131
Raimo, Zura-Millar et al. (2021)
Mitochondrial morphology, bioenergetics and proteomic responses in fatty acid oxidation disorders.
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130
Cox, Ang et al. (2021)
Hidden information on protein function in censuses of proteome foldedness.
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129
Kelly, Carrizo, Edwards-Hicks et al. (2021)
Sulfur sequestration promotes multicellularity during nutrient limitation.
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128
Broome, Chernukhin, Jamieson et al. (2021)
TET2 is a component of the estrogen receptorcomplex and controls 5mC to 5hmC conversionat estrogen receptorcis-regulatory regions.
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127
Meier, Kohler et al. (2021)
Deep learning the collisional cross sections of the peptide universe from a million experimental values.
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126
Choudary, Aggareal et al. (2021)
Molecular and metabolomic interventions for identifying potential bioactive molecules to mitigate diseases and their impacts on crop plants.
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125
Conway, Rossi et al. (2021)
BAP1 activity regulates PcG occupancy and global chromatin condensation counteracting diffuse PCGF3/5-dependent H2AK119ub1 deposition.
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124
Dar, Sawada et al. (2021)
The E3 ubiquitin ligase Cul4b promotes CD4+ T cell expansion by aiding the repair of damaged DNA.
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123
Coomar, Penson et al. (2021)
Arylsulfonamide mediated RBM39 degradation causes aberrant splicing of mitotic kinesins.
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122
Challa, Schmid et al. (2021)
Damage-induced chromatome dynamics link Ubiquitin ligase and proteasome recruitment to histone loss and efficient DNA repair.
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121
Schnurr, Paqué et al. (2021)
Staphylococcus aureus Interferes with Streptococci Spatial Distribution and with Protein Expression of Species within a Polymicrobial Oral Biofilm.
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120
Gaun, Lewis Hardell et al. (2021)
Automated 16-Plex Plasma Proteomics with Real-Time Search and Ion Mobility Mass Spectrometry Enables Large-Scale Profiling in Naked Mole-Rats and Mice.
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119
Winter, Karayel et al. (2021)
Urinary proteome profiling for stratifying patients with familial Parkinson’s disease.
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118
Rackles, Witting et al. (2021)
Reduced peroxisomal import triggers peroxisomal retrograde signaling.
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117
Paulo and Schweppe (2021)
Advances in quantitative high‐throughput phosphoproteomics with sample multiplexing.
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116
Rossi, Coum et al. (2021)
Neural stem cells alter nucleocytoplasmic partitioning and accumulate nuclear polyadenylated transcripts during quiescence.
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115
Wangler, Kamali et al. (2021)
Uncovering the secretome of mesenchymal stromal cells exposed to healthy, traumatic, and degenerative intervertebral discs: a proteomic analysis.
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114
Macchioni, Chiasserini et al. (2021)
Crosstalk between Long-Term Sublethal Oxidative Stress and Detrimental Inflammation as Potential Drivers for Age-Related Retinal Degeneration.
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113
Schlotter, de Freitas et al. (2020)
ApoC-III is a novel inducer of calcification in human aortic valves.
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112
Zaro et al. (2020)
Proteomic analysis of young and old mouse hematopoietic stem cells and their progenitors reveals post-transcriptional regulation in stem cells.
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111
Meier et al. (2020)
diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition.
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110
Petrera et al. (2020)
Multiplatform Approach for Plasma Proteomics: Complementarity of Olink Proximity Extension Assay Technology to Mass Spectrometry-Based Protein Profiling.
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109
Seisenberger, Graf et al. (2020)
Questioning coverage values determined by 2D Western Blots – a critical study on the characterization of anti‐HCP ELISA reagents.
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108
Grossen, Protmann et al. (2020)
Evaluation of bovine milk extracellular vesicles for the delivery of locked nucleic acid antisense oligonucleotides.
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107
Fan Su, Guobao Wang, Tie Li, Wendong Xu (2020)
Cerebral Injury Promotes Regeneration of The Brachial Plexus
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106
Mullins, Keogh et al. (2020)
Transcriptome assisted label free proteomics of hepatic tissue in response to both dietary restriction and compensatory growth in cattle.
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105
Hettich, Greenwald et al. (2020)
Exosomes for Wound Healing: Purification Optimization and Identification of Bioactive Components.
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104
Leiendecker, Jung et al. (2020)
LSD1 inhibition induces differentiation and cell.
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103
Huang, Liang et al. (2020)
Collagen-rich omentum is a premetastatic.
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102
Berndt, Eckstein et al. (2020)
Metabolic Heterogeneity of Human Hepatocellular Carcinoma (HCC): Implications for Personalized Pharmacological Treatment.
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101
Weber, Kabakci et al. (2020)
Chromosome separation during Drosophila male meiosis I requires separase-mediated cleavage of the homolog conjunction protein UNO.
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100
Sundaramurthi, Roche et al. (2020)
Selective Histone Deacetylase 6 Inhibitors Restore Cone Photoreceptor Vision or Outer Segment Morphology in Zebrafish and Mouse Models of Retinal Blindness.
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99
Zulkifli, Neff et al. (2020)
Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism.
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98
Ebner et al. (2020)
Abiotic and past climatic conditions drive protein abundance variation among natural populations of the caddisfly Crunoecia irrorata.
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97
Rogers, Buffolo et al. (2020)
Annexin A1–dependent tethering promotes.
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96
Hao, Kohler et al. (2020)
The extracellular matrix composition of the optic nerve subarachnoid space.
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95
Taylor, Whitfield, Barratt, Didangelos. (2020)
The metalloprotinase ADAMTS5 is expressed by interstitital inflammatory cells in IgA nephropathy and is proteolytically active on the kidney matrix.
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94
Starost, Lindner et al. (2020)
Extrinsic immune cell-derived, but not intrinsic oligodendroglial factors contribute to oligodendroglial differentiation block in multiple sclerosis.
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93
Preger et al. (2020)
Generation and validation of recombinant antibodies to study human aminoacyl tRNA synthetases
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92
Feneberg et al. (2020)
An ALS-linked mutation in TDP-43 disrupts normal protein interactions in the motor neuron response to oxidative stress.
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91
Mathai et al. (2020)
Preclinical Pulmonary Fibrosis (PrePF) Circulating Protein Biomarkers.
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90
Van Bergen et al. (2020)
Mutations in the exocyst component EXOC2 cause severe defects in human brain development.
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89
Meissner K, Lutter D, von Toerne C, Haile A, Woods SC, Hoffmann V, et al. (2020)
Molecular classification of the placebo effect in nausea.
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88
Hörnberg, H., Pérez-Garci, E., Schreiner, D. et al. (2020)
Rescue of oxytocin response and social behaviour in a mouse model of autism.
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87
Djeghloul, D., Patel, B., Kramer, H. et al. (2020)
Identifying proteins bound to native mitotic ESC chromosomes reveals chromatin repressors are important for compaction.
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86
Blume, J.E., Manning, W.C., Troiano, G. et al. (2020)
Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona.
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85
Stukalov et al. (2020)
Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV.
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84
Mueller et al. (2020)
The proteome landscape of the kingdoms of life.
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83
Sobsey et al. (2020)
Targeted and Untargeted Proteomics Approaches in Biomarker Development.
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82
Frey et al. (2020)
Physical Activity Dynamically Regulates the Hippocampal Proteome along the Dorso-Ventral Axis.
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81
Meier et al. (2020)
Deep learning the collisional cross sections of the peptide universe from a million training samples.
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80
Kohl et al. (2020)
Protocol for high-yield production of photo-leucine-labeled proteins in Escherichia coli.
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79
Witt et al. (2020)
Rapid and Culture Free Identification of Francisella in Hare Carcasses by High-Resolution Tandem Mass Spectrometry Proteotyping.
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78
Zaugg et al. (2020)
Gestational diabetes mellitus affects placental iron homeostasis: Mechanism and clinical implications.
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77
Mukherjee et al. (2020)
RNA Interactome Identification via RNA-BioID in Mouse Embryonic Fibroblasts.
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76
Ribeiro et al. (2020)
The effect of Nannochloropsis oceanica feed inclusion on rabbit muscle proteome.
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75
Blaser et al. (2020)
Conserved and Divergent Modulation of Calcification in Atherosclerosis and Aortic Valve Disease by Tissue Extracellular Vesicles.
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74
Bader et al. (2020)
Proteome profiling in cerebrospinal fluid revealsnovel biomarkers of Alzheimer’s disease.
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73
Pinheiro et al. (2020)
Structure and Function of an Elongation Factor P Subfamily in Actinobacteria.
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72
Ebner et al. (2020)
Abiotic drivers of protein abundance variation among natural populations.
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71
Lichtenstein et al. (2020)
An adverse outcome pathway-based approach to assess steatotic mixture effects of hepatotoxic pesticides in vitro.
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70
Ngo et al.(2020)
Limited Environmental Serine Confers Sensitivity to PHGDH Inhibition in Brain Metastasis.
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69
Ding et al. (2020)
Urine proteomics: Evaluation of different sample preparation workflows for quantitative, reproducible and improved depth of analysis.
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68
Shaw et al. (2020)
A proteomic signature for CNS adaptations to the valence of environmental stimulation.
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67
Eichmüller et al. (2020)
Cerebral organoid model reveals excessive proliferation of human caudal late interneuron progenitors in Tuberous Sclerosis Complex.
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66
Guimaraes et al.
A rare codon-based translational program of cell proliferation.
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65
Baumert et al. (2020)
Depletion of histone methyltransferase KMT9 inhibits lung cancer cell proliferation by inducing non‑apoptotic cell death.
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64
Xiang et al. (2020)
Cancer-associated fibroblasts promote immunosuppression by inducing ROS-generating monocytic MDSCs in lung squamous cell carcinoma.
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63
Mullins et al. (2020)
Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth.
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62
Lahiri et al.(2020)
Imaging mass spectrometry and shotgun proteomics reveal dysregulated pathways in hormone induced male infertility.
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61
Sawada et al.(2020)
Functional Importance of Second Heart Field-derived Cells During Thoracic Aortic Aneurysm Formation.
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60
Peruzzotti-Jametti et al. (2020)
Neural stem cells traffic functional mitochondria via extracellular vesicles to correct mitochondrial dysfunction in target cells.
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59
Mayr et al. (2020)
Integrated single cell analysis of human lung fibrosis resolves cellular origins of predictive protein signatures in body fluids.
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58
Kolbe et al. (2020)
Mutual Zonated Interactions of Wnt and Hh Signaling Are Orchestrating the Metabolism of the Adult Liver in Mice and Human.
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57
Lammel et al. (2019)
The effects of arbuscular mycorrhizal fungi (AMF) and Rhizophagus irregularis 2 on soil microorganisms assessed by metatranscriptomics and metaproteomics.
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56
Murgia et al. (2019)
Proteomics of Cytochrome c Oxidase-Negative versus -Positive Muscle Fiber Sections in Mitochondrial Myopathy.
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55
Ali et al. (2019)
Defining decreased protein succinylation of failing human cardiac myofibrils in ischemic cardiomyopathy.
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54
Gutierrez-Escribano et al. (2019)
A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules.
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53
Doellinger et al. (2019)
Sample Preparation by Easy Extraction and Digestion (SPEED) - A Universal, Rapid, and Detergent-free Protocol for Proteomics based on Acid Extraction.
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52
Personnic et al. (2019)
Quorum sensing modulates the formation of virulent Legionella persisters within infected cells.
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51
Zaro and Noh et al. (2019)
Mass spectrometry analysis of mouse hematopoietic stem cells and their progenitors reveals differential expression within and between proteome and transcriptome throughout adult and aged hematopoiesis.
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50
Kao et al. (2019)
Dissection of Drosophila melanogaster Flight Muscles for Omics Approaches.
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49
Arima et al. (2019)
Multi-organ systems study reveals Igfbp7 as a suppressor of gluconeogenesis after gastric bypass surgery.
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