Publications

Publications employing our PreOmics technologies

Here is a sampling of recent publications from scientists who use PreOmics technologies for their research
127
Meier, Kohler et al. (2021)
Deep learning the collisional cross sections of the peptide universe from a million experimental values.
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126
Choudary, Aggareal et al. (2021)
Molecular and metabolomic interventions for identifying potential bioactive molecules to mitigate diseases and their impacts on crop plants.
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125
Conway, Rossi et al. (2021)
BAP1 activity regulates PcG occupancy and global chromatin condensation counteracting diffuse PCGF3/5-dependent H2AK119ub1 deposition.
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124
Dar, Sawada et al. (2021)
The E3 ubiquitin ligase Cul4b promotes CD4+ T cell expansion by aiding the repair of damaged DNA.
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123
Coomar, Penson et al. (2021)
Arylsulfonamide mediated RBM39 degradation causes aberrant splicing of mitotic kinesins.
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122
Challa, Schmid et al. (2021)
Damage-induced chromatome dynamics link Ubiquitin ligase and proteasome recruitment to histone loss and efficient DNA repair.
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121
Schnurr, Paqué et al. (2021)
Staphylococcus aureus Interferes with Streptococci Spatial Distribution and with Protein Expression of Species within a Polymicrobial Oral Biofilm.
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120
Gaun, Lewis Hardell et al. (2021)
Automated 16-Plex Plasma Proteomics with Real-Time Search and Ion Mobility Mass Spectrometry Enables Large-Scale Profiling in Naked Mole-Rats and Mice.
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119
Winter, Karayel et al. (2021)
Urinary proteome profiling for stratifying patients with familial Parkinson’s disease.
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118
Rackles, Witting et al. (2021)
Reduced peroxisomal import triggers peroxisomal retrograde signaling.
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117
Paulo and Schweppe (2021)
Advances in quantitative high‐throughput phosphoproteomics with sample multiplexing.
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116
Rossi, Coum et al. (2021)
Neural stem cells alter nucleocytoplasmic partitioning and accumulate nuclear polyadenylated transcripts during quiescence.
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115
Wangler, Kamali et al. (2021)
Uncovering the secretome of mesenchymal stromal cells exposed to healthy, traumatic, and degenerative intervertebral discs: a proteomic analysis.
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114
Macchioni, Chiasserini et al. (2021)
Crosstalk between Long-Term Sublethal Oxidative Stress and Detrimental Inflammation as Potential Drivers for Age-Related Retinal Degeneration.
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113
Schlotter, de Freitas et al. (2020)
ApoC-III is a novel inducer of calcification in human aortic valves.
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112
Zaro et al. (2020)
Proteomic analysis of young and old mouse hematopoietic stem cells and their progenitors reveals post-transcriptional regulation in stem cells.
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111
Meier et al. (2020)
diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition.
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110
Petrera et al. (2020)
Multiplatform Approach for Plasma Proteomics: Complementarity of Olink Proximity Extension Assay Technology to Mass Spectrometry-Based Protein Profiling.
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109
Seisenberger, Graf et al. (2020)
Questioning coverage values determined by 2D Western Blots – a critical study on the characterization of anti‐HCP ELISA reagents.
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108
Grossen, Protmann et al. (2020)
Evaluation of bovine milk extracellular vesicles for the delivery of locked nucleic acid antisense oligonucleotides.
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107
Fan Su, Guobao Wang, Tie Li, Wendong Xu (2020)
Cerebral Injury Promotes Regeneration of The Brachial Plexus
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106
Mullins, Keogh et al. (2020)
Transcriptome assisted label free proteomics of hepatic tissue in response to both dietary restriction and compensatory growth in cattle.
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105
Hettich, Greenwald et al. (2020)
Exosomes for Wound Healing: Purification Optimization and Identification of Bioactive Components.
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104
Leiendecker, Jung et al. (2020)
LSD1 inhibition induces differentiation and cell.
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103
Huang, Liang et al. (2020)
Collagen-rich omentum is a premetastatic.
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102
Berndt, Eckstein et al. (2020)
Metabolic Heterogeneity of Human Hepatocellular Carcinoma (HCC): Implications for Personalized Pharmacological Treatment.
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101
Weber, Kabakci et al. (2020)
Chromosome separation during Drosophila male meiosis I requires separase-mediated cleavage of the homolog conjunction protein UNO.
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100
Sundaramurthi, Roche et al. (2020)
Selective Histone Deacetylase 6 Inhibitors Restore Cone Photoreceptor Vision or Outer Segment Morphology in Zebrafish and Mouse Models of Retinal Blindness.
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99
Zulkifli, Neff et al. (2020)
Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism.
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98
Ebner et al. (2020)
Abiotic and past climatic conditions drive protein abundance variation among natural populations of the caddisfly Crunoecia irrorata.
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97
Rogers, Buffolo et al. (2020)
Annexin A1–dependent tethering promotes.
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96
Hao, Kohler et al. (2020)
The extracellular matrix composition of the optic nerve subarachnoid space.
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95
Taylor, Whitfield, Barratt, Didangelos. (2020)
The metalloprotinase ADAMTS5 is expressed by interstitital inflammatory cells in IgA nephropathy and is proteolytically active on the kidney matrix.
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94
Starost, Lindner et al. (2020)
Extrinsic immune cell-derived, but not intrinsic oligodendroglial factors contribute to oligodendroglial differentiation block in multiple sclerosis.
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93
Preger et al. (2020)
Generation and validation of recombinant antibodies to study human aminoacyl tRNA synthetases
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92
Feneberg et al. (2020)
An ALS-linked mutation in TDP-43 disrupts normal protein interactions in the motor neuron response to oxidative stress.
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91
Mathai et al. (2020)
Preclinical Pulmonary Fibrosis (PrePF) Circulating Protein Biomarkers.
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90
Van Bergen et al. (2020)
Mutations in the exocyst component EXOC2 cause severe defects in human brain development.
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89
Meissner K, Lutter D, von Toerne C, Haile A, Woods SC, Hoffmann V, et al. (2020)
Molecular classification of the placebo effect in nausea.
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88
Hörnberg, H., Pérez-Garci, E., Schreiner, D. et al. (2020)
Rescue of oxytocin response and social behaviour in a mouse model of autism.
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87
Djeghloul, D., Patel, B., Kramer, H. et al. (2020)
Identifying proteins bound to native mitotic ESC chromosomes reveals chromatin repressors are important for compaction.
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86
Blume, J.E., Manning, W.C., Troiano, G. et al. (2020)
Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona.
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85
Stukalov et al. (2020)
Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV.
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84
Mueller et al. (2020)
The proteome landscape of the kingdoms of life.
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83
Sobsey et al. (2020)
Targeted and Untargeted Proteomics Approaches in Biomarker Development.
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82
Frey et al. (2020)
Physical Activity Dynamically Regulates the Hippocampal Proteome along the Dorso-Ventral Axis.
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81
Meier et al. (2020)
Deep learning the collisional cross sections of the peptide universe from a million training samples.
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80
Kohl et al. (2020)
Protocol for high-yield production of photo-leucine-labeled proteins in Escherichia coli.
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79
Witt et al. (2020)
Rapid and Culture Free Identification of Francisella in Hare Carcasses by High-Resolution Tandem Mass Spectrometry Proteotyping.
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78
Zaugg et al. (2020)
Gestational diabetes mellitus affects placental iron homeostasis: Mechanism and clinical implications.
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77
Mukherjee et al. (2020)
RNA Interactome Identification via RNA-BioID in Mouse Embryonic Fibroblasts.
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76
Ribeiro et al. (2020)
The effect of Nannochloropsis oceanica feed inclusion on rabbit muscle proteome.
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75
Blaser et al. (2020)
Conserved and Divergent Modulation of Calcification in Atherosclerosis and Aortic Valve Disease by Tissue Extracellular Vesicles.
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74
Bader et al. (2020)
Proteome profiling in cerebrospinal fluid revealsnovel biomarkers of Alzheimer’s disease.
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73
Pinheiro et al. (2020)
Structure and Function of an Elongation Factor P Subfamily in Actinobacteria.
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72
Ebner et al. (2020)
Abiotic drivers of protein abundance variation among natural populations.
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71
Lichtenstein et al. (2020)
An adverse outcome pathway-based approach to assess steatotic mixture effects of hepatotoxic pesticides in vitro.
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70
Ngo et al.(2020)
Limited Environmental Serine Confers Sensitivity to PHGDH Inhibition in Brain Metastasis.
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69
Ding et al. (2020)
Urine proteomics: Evaluation of different sample preparation workflows for quantitative, reproducible and improved depth of analysis.
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68
Shaw et al. (2020)
A proteomic signature for CNS adaptations to the valence of environmental stimulation.
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67
Eichmüller et al. (2020)
Cerebral organoid model reveals excessive proliferation of human caudal late interneuron progenitors in Tuberous Sclerosis Complex.
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66
Guimaraes et al.
A rare codon-based translational program of cell proliferation.
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65
Baumert et al. (2020)
Depletion of histone methyltransferase KMT9 inhibits lung cancer cell proliferation by inducing non‑apoptotic cell death.
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64
Xiang et al. (2020)
Cancer-associated fibroblasts promote immunosuppression by inducing ROS-generating monocytic MDSCs in lung squamous cell carcinoma.
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63
Mullins et al. (2020)
Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth.
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62
Lahiri et al.(2020)
Imaging mass spectrometry and shotgun proteomics reveal dysregulated pathways in hormone induced male infertility.
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61
Sawada et al.(2020)
Functional Importance of Second Heart Field-derived Cells During Thoracic Aortic Aneurysm Formation.
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60
Peruzzotti-Jametti et al. (2020)
Neural stem cells traffic functional mitochondria via extracellular vesicles to correct mitochondrial dysfunction in target cells.
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59
Mayr et al. (2020)
Integrated single cell analysis of human lung fibrosis resolves cellular origins of predictive protein signatures in body fluids.
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58
Kolbe et al. (2020)
Mutual Zonated Interactions of Wnt and Hh Signaling Are Orchestrating the Metabolism of the Adult Liver in Mice and Human.
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57
Lammel et al. (2019)
The effects of arbuscular mycorrhizal fungi (AMF) and Rhizophagus irregularis 2 on soil microorganisms assessed by metatranscriptomics and metaproteomics.
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56
Murgia et al. (2019)
Proteomics of Cytochrome c Oxidase-Negative versus -Positive Muscle Fiber Sections in Mitochondrial Myopathy.
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55
Ali et al. (2019)
Defining decreased protein succinylation of failing human cardiac myofibrils in ischemic cardiomyopathy.
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54
Gutierrez-Escribano et al. (2019)
A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules.
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53
Doellinger et al. (2019)
Sample Preparation by Easy Extraction and Digestion (SPEED) - A Universal, Rapid, and Detergent-free Protocol for Proteomics based on Acid Extraction.
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52
Personnic et al. (2019)
Quorum sensing modulates the formation of virulent Legionella persisters within infected cells.
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51
Zaro and Noh et al. (2019)
Mass spectrometry analysis of mouse hematopoietic stem cells and their progenitors reveals differential expression within and between proteome and transcriptome throughout adult and aged hematopoiesis.
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50
Kao et al. (2019)
Dissection of Drosophila melanogaster Flight Muscles for Omics Approaches.
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49
Arima et al. (2019)
Multi-organ systems study reveals Igfbp7 as a suppressor of gluconeogenesis after gastric bypass surgery.
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48
Karayel et al. (2019)
Accurate MS-based Rab10 phosphorylation stoichiometry determination as readout for LRRK2 activity in Parkinson’s disease.
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47
Hock et al. (2019)
HIGD2A is required for assembly of the COX3 module of human mitochondrial complex IV.
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46
Nordgaard et al. (2019)
Metallopeptidase Inhibitor 1 (TIMP-1) promotes receptor tyrosine kinase c-Kit signaling in colorectal cancer.
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45
Ebner et al. (2019)
Comparative proteomics of stenotopic caddisfly Crunoecia irrorata identifies acclimation strategies to warming.
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44
Meyer et al. (2019)
Phosphorylation of MCPH1 isoforms during mitosis followed by isoform-specific degradation by APC/C-CDH1.
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43
Ham et al. (2019)
mTORC1 signaling is not essential for the maintenance of muscle mass and function in adult sedentary mice.
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42
Schneider et al. (2019)
Diverse roles of TssA-like proteins in the assembly of bacterial type VI secretion systems.
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41
Niu et al. (2019)
Quick and clean: Cracking sentences encoded in E. coli by LC–MS/MS, de novo sequencing, and dictionary search.
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40
Miller et al. (2019)
Characterization of circulating plasma proteins in dairy cows with cytological endometritis.
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39
Kufer et al. (2019)
Evaluation of peptide fractionation and native digestion as two novel sample preparation workflows to improve HCP characterization by LC-MS/MS.
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38
Meier et al. (2019)
Parallel accumulation – serial fragmentation combined with dataindependent acquisition (diaPASEF): Bottom-up proteomics with near optimal ion usage.
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37
Parks et al. (2019)
Comparison and Functional Genetic Analysis of Striatal Protein Expression Among Diverse Inbred Mouse Strains.
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36
Xiao et al. (2019)
Metabolic reprogramming and elevation of glutathione in chromophobe renal cell carcinomas.
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35
Bernd et al. (2019)
Characterization of Lipid and Lipid Droplet Metabolism in Human HCC.
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34
Marentette et al. (2019)
Multi-omics Analysis of Liver Infiltrating Macrophages Following Ethanol Consumption.
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33
Puleston et al. (2019)
Polyamines and eIF5A Hypusination Modulate Mitochondrial Respiration and Macrophage Activation.
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32
Greenwood et al. (2019)
Promiscuous Targeting of Cellular Proteins by Vpr Drives Systems-Level Proteomic Remodeling in HIV-1 Infection.
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31
Higashi et al. (2019)
A Study into the ADP-Ribosylome of IFN-γ-Stimulated THP‑1 Human Macrophage-like Cells Identifies ARTD8/PARP14 and ARTD9/PARP9 ADP-Ribosylation.
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30
Naamati et al. (2019)
Functional proteomic atlas of HIV infection in primary human CD4+ T cells.
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29
Sacco et al. (2019)
Phosphoproteomics Reveals the GSK3-PDX1 Axis as a Key Pathogenic Signaling Node in Diabetic Islets.
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28
Luedin et al. (2019)
Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”.
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