Publications

Publications employing our PreOmics iST or iST-NHS technologies

Here is a sampling of recent publications from scientists who use PreOmics technologies for their research
86
Stukalov et al. (2020)
Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV.
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85
Mueller et al. (2020)
The proteome landscape of the kingdoms of life.
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84
Sobsey et al. (2020)
Targeted and Untargeted Proteomics Approaches in Biomarker Development.
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83
Frey et al. (2020)
Physical Activity Dynamically Regulates the Hippocampal Proteome along the Dorso-Ventral Axis.
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82
Meier et al. (2020)
Deep learning the collisional cross sections of the peptide universe from a million training samples.
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81
Kohl et al. (2020)
Protocol for high-yield production of photo-leucine-labeled proteins in Escherichia coli.
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80
Witt et al. (2020)
Rapid and Culture Free Identification of Francisella in Hare Carcasses by High-Resolution Tandem Mass Spectrometry Proteotyping.
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79
Zaugg et al. (2020)
Gestational diabetes mellitus affects placental iron homeostasis: Mechanism and clinical implications.
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78
Mukherjee et al. (2020)
RNA Interactome Identification via RNA-BioID in Mouse Embryonic Fibroblasts.
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77
Ribeiro et al. (2020)
The effect of Nannochloropsis oceanica feed inclusion on rabbit muscle proteome.
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76
Blaser et al. (2020)
Conserved and Divergent Modulation of Calcification in Atherosclerosis and Aortic Valve Disease by Tissue Extracellular Vesicles.
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75
Bader et al. (2020)
Proteome profiling in cerebrospinal fluid revealsnovel biomarkers of Alzheimer’s disease.
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74
Pinheiro et al. (2020)
Structure and Function of an Elongation Factor P Subfamily in Actinobacteria.
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73
Ebner et al. (2020)
Abiotic drivers of protein abundance variation among natural populations.
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72
Lichtenstein et al. (2020)
An adverse outcome pathway-based approach to assess steatotic mixture effects of hepatotoxic pesticides in vitro.
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71
Ngo et al.(2020)
Limited Environmental Serine Confers Sensitivity to PHGDH Inhibition in Brain Metastasis.
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70
Ding et al. (2020)
Urine proteomics: Evaluation of different sample preparation workflows for quantitative, reproducible and improved depth of analysis.
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69
Shaw et al. (2020)
A proteomic signature for CNS adaptations to the valence of environmental stimulation.
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68
Eichmüller et al. (2020)
Cerebral organoid model reveals excessive proliferation of human caudal late interneuron progenitors in Tuberous Sclerosis Complex.
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67
Guimaraes et al.
A rare codon-based translational program of cell proliferation.
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66
Baumert et al. (2020)
Depletion of histone methyltransferase KMT9 inhibits lung cancer cell proliferation by inducing non‑apoptotic cell death.
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65
Meissner et al. (2020)
Molecular classification of the placebo effect in nausea.
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64
Xiang et al. (2020)
Cancer-associated fibroblasts promote immunosuppression by inducing ROS-generating monocytic MDSCs in lung squamous cell carcinoma.
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63
Mullins et al. (2020)
Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth.
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62
Lahiri et al.(2020)
Imaging mass spectrometry and shotgun proteomics reveal dysregulated pathways in hormone induced male infertility.
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61
Sawada et al.(2020)
Functional Importance of Second Heart Field-derived Cells During Thoracic Aortic Aneurysm Formation.
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60
Peruzzotti-Jametti et al. (2020)
Neural stem cells traffic functional mitochondria via extracellular vesicles to correct mitochondrial dysfunction in target cells.
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59
Mayr et al. (2020)
Integrated single cell analysis of human lung fibrosis resolves cellular origins of predictive protein signatures in body fluids.
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58
Kolbe et al. (2020)
Mutual Zonated Interactions of Wnt and Hh Signaling Are Orchestrating the Metabolism of the Adult Liver in Mice and Human.
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57
Lammel et al. (2019)
The effects of arbuscular mycorrhizal fungi (AMF) and Rhizophagus irregularis 2 on soil microorganisms assessed by metatranscriptomics and metaproteomics.
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57
Murgia et al. (2019)
Proteomics of Cytochrome c Oxidase-Negative versus -Positive Muscle Fiber Sections in Mitochondrial Myopathy.
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55
Ali et al. (2019)
Defining decreased protein succinylation of failing human cardiac myofibrils in ischemic cardiomyopathy.
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54
Gutierrez-Escribano et al. (2019)
A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules.
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53
Doellinger et al. (2019)
Sample Preparation by Easy Extraction and Digestion (SPEED) - A Universal, Rapid, and Detergent-free Protocol for Proteomics based on Acid Extraction.
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52
Personnic et al. (2019)
Quorum sensing modulates the formation of virulent Legionella persisters within infected cells.
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51
Zaro and Noh et al. (2019)
Mass spectrometry analysis of mouse hematopoietic stem cells and their progenitors reveals differential expression within and between proteome and transcriptome throughout adult and aged hematopoiesis.
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50
Kao et al. (2019)
Dissection of Drosophila melanogaster Flight Muscles for Omics Approaches.
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49
Arima et al. (2019)
Multi-organ systems study reveals Igfbp7 as a suppressor of gluconeogenesis after gastric bypass surgery.
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48
Karayel et al. (2019)
Accurate MS-based Rab10 phosphorylation stoichiometry determination as readout for LRRK2 activity in Parkinson’s disease.
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47
Hock et al. (2019)
HIGD2A is required for assembly of the COX3 module of human mitochondrial complex IV.
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46
Nordgaard et al. (2019)
Metallopeptidase Inhibitor 1 (TIMP-1) promotes receptor tyrosine kinase c-Kit signaling in colorectal cancer.
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45
Ebner et al. (2019)
Comparative proteomics of stenotopic caddisfly Crunoecia irrorata identifies acclimation strategies to warming.
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44
Meyer et al. (2019)
Phosphorylation of MCPH1 isoforms during mitosis followed by isoform-specific degradation by APC/C-CDH1.
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43
Ham et al. (2019)
mTORC1 signaling is not essential for the maintenance of muscle mass and function in adult sedentary mice.
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42
Schneider et al. (2019)
Diverse roles of TssA-like proteins in the assembly of bacterial type VI secretion systems.
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41
Niu et al. (2019)
Quick and clean: Cracking sentences encoded in E. coli by LC–MS/MS, de novo sequencing, and dictionary search.
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40
Miller et al. (2019)
Characterization of circulating plasma proteins in dairy cows with cytological endometritis.
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39
Kufer et al. (2019)
Evaluation of peptide fractionation and native digestion as two novel sample preparation workflows to improve HCP characterization by LC-MS/MS.
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38
Meier et al. (2019)
Parallel accumulation – serial fragmentation combined with dataindependent acquisition (diaPASEF): Bottom-up proteomics with near optimal ion usage.
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37
Parks et al. (2019)
Comparison and Functional Genetic Analysis of Striatal Protein Expression Among Diverse Inbred Mouse Strains.
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36
Xiao et al. (2019)
Metabolic reprogramming and elevation of glutathione in chromophobe renal cell carcinomas.
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35
Bernd et al. (2019)
Characterization of Lipid and Lipid Droplet Metabolism in Human HCC.
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34
Marentette et al. (2019)
Multi-omics Analysis of Liver Infiltrating Macrophages Following Ethanol Consumption.
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33
Puleston et al. (2019)
Polyamines and eIF5A Hypusination Modulate Mitochondrial Respiration and Macrophage Activation.
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32
Greenwood et al. (2019)
Promiscuous Targeting of Cellular Proteins by Vpr Drives Systems-Level Proteomic Remodeling in HIV-1 Infection.
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31
Higashi et al. (2019)
A Study into the ADP-Ribosylome of IFN-γ-Stimulated THP‑1 Human Macrophage-like Cells Identifies ARTD8/PARP14 and ARTD9/PARP9 ADP-Ribosylation.
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30
Naamati et al. (2019)
Functional proteomic atlas of HIV infection in primary human CD4+ T cells.
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29
Sacco et al. (2019)
Phosphoproteomics Reveals the GSK3-PDX1 Axis as a Key Pathogenic Signaling Node in Diabetic Islets.
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28
Luedin et al. (2019)
Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”.
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27
Niu et al. (2019)
Plasma proteome profiling discovers novel proteins associated with non‐alcoholic fatty liver disease.
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26
Wichmann et al. (2019)
MaxQuant.Live enables global targeting of more than 25,000 peptides.
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25
Mukherjee et al. (2019)
β-actin mRNA interactome mapping by proximity biotinylation.
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24
Vilhena et al. (2019)
Importance of Pyruvate Sensing and Transport for the Resuscitation of Viable but Nonculturable Escherichia coli K-12.
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23
Wewer Albrechtsen et al. (2018)
Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery.
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22
Meier et al. (2018)
Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer.
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21
Geyer et al. (2018)
Plasma Proteome Profiling to detect and avoid sample-related biases in biomarker studies.
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20
Murgia et al. (2018)
Single fiber proteomics of respiratory chain defects in mitochondrial disorder.
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19
Bache et al. (2018)
A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics.
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18
Doll et al. (2018)
Rapid proteomic analysis for solid tumors reveals LSD1 as a drug target in an end-stage cancer patient.
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17
Schäfer et al. (2018)
Establishment and Validation of Competitive Counterflow as a Method To Detect Substrates of the Organic Anion Transporting Polypeptide 2B1.
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16
Davies et al. (2018)
AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A.
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15
Arquint et al. (2018)
The SKP1-Cullin-F-box E3 ligase bTrCP and CDK2 cooperate to control STIL abundance and centriole number.
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14
Shiozaki et al. (2018)
The CDK9-cyclin T1 complex mediates saturated fatty acid-induced vascular calcification by inducing expression of the transcription factor CHOP.
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13
Virreira Winter et al. (2018)
EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification.
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12
Dragoi et al. (2018)
Proteomics Analysis of Monocyte-Derived Hepatocyte-Like Cells Identifies Integrin Beta 3 as a Specific Biomarker for Drug-Induced Liver Injury by Diclofenac.
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11
Meier et al. (2018)
BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes.
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10
Musa et al. (2018)
Comprehensive Proteomic Investigation of Ebf1 Heterozygosity in Pro‑B Lymphocytes Utilizing Data Independent Acquisition.
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9
Karg et al. (2017)
Ubiquitome Analysis Reveals PCNA-Associated Factor 15 (PAF15) as a Specific Ubiquitination Target of UHRF1 in Embryonic Stem Cells.
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8
Nazarov et al. (2017)
Cryo-EM reconstruction of Type VI secretion system baseplate and sheath distal end.
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7
Doll et al. (2017)
Region and cell-type resolved quantitative proteomic map of the human heart.
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6
Sielaff et al. (2017)
Evaluation of FASP, SP3, and iST Protocols for Proteomic Sample Preparation in the Low Microgram Range.
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5
Kulak et al. (2017)
Loss-less nano-fractionator for high sensitivity, high coverage proteomics.
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4
Geyer et al. (2016)
Proteomics reveals the effects of sustained weight loss on the human plasma proteome.
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3
Geyer et al. (2016)
Plasma Proteome Profiling to Assess Human Health and Disease.
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2
Grassl et al. (2016)
Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome.
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1
Kulak et al. (2014)
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells.
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